IL_8E3L_119

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_119 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0878

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8E3L|1|I|G|1666
8E3L|1|I|G|1667
8E3L|1|I|A|1668
8E3L|1|I|A|1669
8E3L|1|I|C|1670
8E3L|1|I|U|1671
8E3L|1|I|A|1672
8E3L|1|I|G|1673
8E3L|1|I|G|1674
*
8E3L|1|I|C|1990
8E3L|1|I|U|1991
8E3L|1|I|G|1992
8E3L|1|I|U|1993
8E3L|1|I|C|1994

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3