IL_8E3M_042

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

8E3M|1|I|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3M_042 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.0632

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

8E3M|1|I|G|1202
8E3M|1|I|U|1203
8E3M|1|I|A|1204
8E3M|1|I|A|1205
8E3M|1|I|G|1206
*
8E3M|1|I|U|1240
8E3M|1|I|A|1241
8E3M|1|I|U|1242
8E3M|1|I|C|1243

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4