IL_8E3M_106

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGU*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3M_106 not in the Motif Atlas

Geometric match to IL_5UNE_003

Geometric discrepancy: 0.1395

The information below is about IL_5UNE_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8E3M|1|J|G|20
8E3M|1|J|G|21
8E3M|1|J|U|22
*
8E3M|1|J|G|61
8E3M|1|J|C|62
8E3M|1|J|C|63

Current chains

Chain J

5S ribosomal RNA

Nearby chains