IL_8E3M_110

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3M_110 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2921

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8E3M|1|I|C|274
8E3M|1|I|C|275
8E3M|1|I|U|276
8E3M|1|I|G|277
8E3M|1|I|A|278
8E3M|1|I|A|279
8E3M|1|I|U|280
8E3M|1|I|C|281
*
8E3M|1|I|G|359
8E3M|1|I|U|360
8E3M|1|I|G|361
8E3M|1|I|A|362
8E3M|1|I|G|363

Current chains

Chain I

50S ribosomal RNA

Nearby chains