IL_8E3O_085

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GAGC*GUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3O_085 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.2995

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8E3O|1|I|G|2100
8E3O|1|I|A|2101
8E3O|1|I|G|2102
8E3O|1|I|C|2103
*
8E3O|1|I|G|2186
8E3O|1|I|U|2187
8E3O|1|I|U|2188
8E3O|1|I|U|2189

Current chains

Chain I

23S ribosomal RNA

Nearby chains