IL_8E41_056

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_056 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3251

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.1

Basepair signature

cWW-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8E41|1|I|U|1474
8E41|1|I|G|1475
8E41|1|I|U|1476
8E41|1|I|A|1477
8E41|1|I|G|1478
8E41|1|I|G|1479
*
8E41|1|I|C|1512
8E41|1|I|U|1513
8E41|1|I|G|1514
8E41|1|I|A|1515
8E41|1|I|G|1516
8E41|1|I|G|1517

Current chains

Chain I

50S ribosomal RNA

Nearby chains