IL_8E41_065

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8E41|1|I|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_065 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0646

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8E41|1|I|C|1686
8E41|1|I|G|1687
8E41|1|I|U|1688
8E41|1|I|A|1689
8E41|1|I|A|1690
8E41|1|I|C|1691
*
8E41|1|I|G|1696
8E41|1|I|G|1697
8E41|1|I|A|1698
8E41|1|I|G|1699
8E41|1|I|A|1700
8E41|1|I|A|1701
8E41|1|I|G|1702

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2