IL_8E41_115

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GU(G7M)*CC

Length

5 nucleotides

Bulged bases

8E41|1|I|U|2068

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E41_115 not in the Motif Atlas

Homologous match to IL_7A0S_075

Geometric discrepancy: 0.0892

The information below is about IL_7A0S_075

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8E41|1|I|G|2067
8E41|1|I|U|2068
8E41|1|I|G7M|2069
*
8E41|1|I|C|2442
8E41|1|I|C|2443

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain B

VIRGINIAMYCIN S1

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4