IL_8E42_001

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

UUA*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUA,UAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E42_001 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.174

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8E42|1|I|U|3
8E42|1|I|U|4
8E42|1|I|A|5
*
8E42|1|I|U|2898
8E42|1|I|A|2899
8E42|1|I|A|2900

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13