IL_8E42_121

3D structure

PDB id

8E42 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and azithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGC*GGAGCCGACCUUGAAAUACCACCCUUUAAUGU

Length

84 nucleotides

Bulged bases

8E42|1|I|C|2104, 8E42|1|I|G|2116, 8E42|1|I|U|2122, 8E42|1|I|G|2128, 8E42|1|I|U|2131, 8E42|1|I|U|2132, 8E42|1|I|G|2133, 8E42|1|I|A|2135, 8E42|1|I|G|2136, 8E42|1|I|G|2140, 8E42|1|I|G|2157, 8E42|1|I|C|2160, 8E42|1|I|A|2163, 8E42|1|I|C|2164, 8E42|1|I|U|2167, 8E42|1|I|A|2171, 8E42|1|I|C|2174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E42|1|I|G|2102
8E42|1|I|C|2103
8E42|1|I|C|2104
8E42|1|I|U|2105
8E42|1|I|U|2106
8E42|1|I|G|2107
8E42|1|I|A|2108
8E42|1|I|U|2109
8E42|1|I|G|2110
8E42|1|I|U|2111
8E42|1|I|G|2112
8E42|1|I|U|2113
8E42|1|I|A|2114
8E42|1|I|G|2115
8E42|1|I|G|2116
8E42|1|I|A|2117
8E42|1|I|U|2118
8E42|1|I|A|2119
8E42|1|I|G|2120
8E42|1|I|G|2121
8E42|1|I|U|2122
8E42|1|I|G|2123
8E42|1|I|G|2124
8E42|1|I|G|2125
8E42|1|I|A|2126
8E42|1|I|G|2127
8E42|1|I|G|2128
8E42|1|I|C|2129
8E42|1|I|U|2130
8E42|1|I|U|2131
8E42|1|I|U|2132
8E42|1|I|G|2133
8E42|1|I|A|2134
8E42|1|I|A|2135
8E42|1|I|G|2136
8E42|1|I|U|2137
8E42|1|I|G|2138
8E42|1|I|U|2139
8E42|1|I|G|2140
8E42|1|I|G|2141
8E42|1|I|A|2142
8E42|1|I|C|2143
8E42|1|I|G|2144
8E42|1|I|C|2145
8E42|1|I|C|2146
8E42|1|I|A|2147
8E42|1|I|G|2148
8E42|1|I|U|2149
8E42|1|I|C|2150
8E42|1|I|U|2151
8E42|1|I|G|2152
8E42|1|I|C|2153
*
8E42|1|I|G|2156
8E42|1|I|G|2157
8E42|1|I|A|2158
8E42|1|I|G|2159
8E42|1|I|C|2160
8E42|1|I|C|2161
8E42|1|I|G|2162
8E42|1|I|A|2163
8E42|1|I|C|2164
8E42|1|I|C|2165
8E42|1|I|U|2166
8E42|1|I|U|2167
8E42|1|I|G|2168
8E42|1|I|A|2169
8E42|1|I|A|2170
8E42|1|I|A|2171
8E42|1|I|U|2172
8E42|1|I|A|2173
8E42|1|I|C|2174
8E42|1|I|C|2175
8E42|1|I|A|2176
8E42|1|I|C|2177
8E42|1|I|C|2178
8E42|1|I|C|2179
8E42|1|I|U|2180
8E42|1|I|U|2181
8E42|1|I|U|2182
8E42|1|I|A|2183
8E42|1|I|A|2184
8E42|1|I|U|2185
8E42|1|I|G|2186
8E42|1|I|U|2187

Current chains

Chain I

50S ribosomal RNA

Nearby chains