IL_8E43_012

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8E43|1|I|A|504, 8E43|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E43_012 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0668

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8E43|1|I|G|481
8E43|1|I|A|482
8E43|1|I|A|483
8E43|1|I|C|484
*
8E43|1|I|G|496
8E43|1|I|A|497
8E43|1|I|G|498
8E43|1|I|U|499
8E43|1|I|G|500
8E43|1|I|A|501
8E43|1|I|A|502
8E43|1|I|A|503
8E43|1|I|A|504
8E43|1|I|A|505
8E43|1|I|G|506
8E43|1|I|A|507
8E43|1|I|A|508
8E43|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22