3D structure

PDB id
8E43 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound streptogramin A analog 3336
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
CGAAA(5MU)UCCUUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
8E43|1|I|A|1938, 8E43|1|I|U|1944
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8E43_076 not in the Motif Atlas
Homologous match to IL_7A0S_072
Geometric discrepancy: 0.1122
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

8E43|1|I|C|1934
8E43|1|I|G|1935
8E43|1|I|A|1936
8E43|1|I|A|1937
8E43|1|I|A|1938
8E43|1|I|5MU|1939
8E43|1|I|U|1940
8E43|1|I|C|1941
8E43|1|I|C|1942
8E43|1|I|U|1943
8E43|1|I|U|1944
8E43|1|I|G|1945
*
8E43|1|I|C|1961
8E43|1|I|5MC|1962
8E43|1|I|U|1963
8E43|1|I|G|1964

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L2

Coloring options:


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