IL_8E43_121

3D structure

PDB id

8E43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3336

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGC*GGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

82 nucleotides

Bulged bases

8E43|1|I|C|2104, 8E43|1|I|G|2116, 8E43|1|I|U|2122, 8E43|1|I|G|2125, 8E43|1|I|A|2126, 8E43|1|I|G|2128, 8E43|1|I|U|2131, 8E43|1|I|U|2132, 8E43|1|I|A|2134, 8E43|1|I|A|2135, 8E43|1|I|G|2140, 8E43|1|I|A|2158, 8E43|1|I|C|2160, 8E43|1|I|A|2163, 8E43|1|I|C|2164, 8E43|1|I|U|2167, 8E43|1|I|U|2172, 8E43|1|I|A|2173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E43|1|I|C|2103
8E43|1|I|C|2104
8E43|1|I|U|2105
8E43|1|I|U|2106
8E43|1|I|G|2107
8E43|1|I|A|2108
8E43|1|I|U|2109
8E43|1|I|G|2110
8E43|1|I|U|2111
8E43|1|I|G|2112
8E43|1|I|U|2113
8E43|1|I|A|2114
8E43|1|I|G|2115
8E43|1|I|G|2116
8E43|1|I|A|2117
8E43|1|I|U|2118
8E43|1|I|A|2119
8E43|1|I|G|2120
8E43|1|I|G|2121
8E43|1|I|U|2122
8E43|1|I|G|2123
8E43|1|I|G|2124
8E43|1|I|G|2125
8E43|1|I|A|2126
8E43|1|I|G|2127
8E43|1|I|G|2128
8E43|1|I|C|2129
8E43|1|I|U|2130
8E43|1|I|U|2131
8E43|1|I|U|2132
8E43|1|I|G|2133
8E43|1|I|A|2134
8E43|1|I|A|2135
8E43|1|I|G|2136
8E43|1|I|U|2137
8E43|1|I|G|2138
8E43|1|I|U|2139
8E43|1|I|G|2140
8E43|1|I|G|2141
8E43|1|I|A|2142
8E43|1|I|C|2143
8E43|1|I|G|2144
8E43|1|I|C|2145
8E43|1|I|C|2146
8E43|1|I|A|2147
8E43|1|I|G|2148
8E43|1|I|U|2149
8E43|1|I|C|2150
8E43|1|I|U|2151
8E43|1|I|G|2152
8E43|1|I|C|2153
*
8E43|1|I|G|2156
8E43|1|I|G|2157
8E43|1|I|A|2158
8E43|1|I|G|2159
8E43|1|I|C|2160
8E43|1|I|C|2161
8E43|1|I|G|2162
8E43|1|I|A|2163
8E43|1|I|C|2164
8E43|1|I|C|2165
8E43|1|I|U|2166
8E43|1|I|U|2167
8E43|1|I|G|2168
8E43|1|I|A|2169
8E43|1|I|A|2170
8E43|1|I|A|2171
8E43|1|I|U|2172
8E43|1|I|A|2173
8E43|1|I|C|2174
8E43|1|I|C|2175
8E43|1|I|A|2176
8E43|1|I|C|2177
8E43|1|I|C|2178
8E43|1|I|C|2179
8E43|1|I|U|2180
8E43|1|I|U|2181
8E43|1|I|U|2182
8E43|1|I|A|2183
8E43|1|I|A|2184
8E43|1|I|U|2185
8E43|1|I|G|2186

Current chains

Chain I

23S ribosomal RNA

Nearby chains