IL_8E44_115

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGC*GGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

86 nucleotides

Bulged bases

8E44|1|I|C|2104, 8E44|1|I|U|2111, 8E44|1|I|G|2116, 8E44|1|I|U|2122, 8E44|1|I|G|2125, 8E44|1|I|A|2126, 8E44|1|I|G|2128, 8E44|1|I|U|2131, 8E44|1|I|U|2132, 8E44|1|I|A|2135, 8E44|1|I|G|2136, 8E44|1|I|G|2140, 8E44|1|I|C|2145, 8E44|1|I|G|2157, 8E44|1|I|C|2160, 8E44|1|I|A|2163, 8E44|1|I|C|2164, 8E44|1|I|U|2167, 8E44|1|I|A|2171, 8E44|1|I|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E44|1|I|A|2101
8E44|1|I|G|2102
8E44|1|I|C|2103
8E44|1|I|C|2104
8E44|1|I|U|2105
8E44|1|I|U|2106
8E44|1|I|G|2107
8E44|1|I|A|2108
8E44|1|I|U|2109
8E44|1|I|G|2110
8E44|1|I|U|2111
8E44|1|I|G|2112
8E44|1|I|U|2113
8E44|1|I|A|2114
8E44|1|I|G|2115
8E44|1|I|G|2116
8E44|1|I|A|2117
8E44|1|I|U|2118
8E44|1|I|A|2119
8E44|1|I|G|2120
8E44|1|I|G|2121
8E44|1|I|U|2122
8E44|1|I|G|2123
8E44|1|I|G|2124
8E44|1|I|G|2125
8E44|1|I|A|2126
8E44|1|I|G|2127
8E44|1|I|G|2128
8E44|1|I|C|2129
8E44|1|I|U|2130
8E44|1|I|U|2131
8E44|1|I|U|2132
8E44|1|I|G|2133
8E44|1|I|A|2134
8E44|1|I|A|2135
8E44|1|I|G|2136
8E44|1|I|U|2137
8E44|1|I|G|2138
8E44|1|I|U|2139
8E44|1|I|G|2140
8E44|1|I|G|2141
8E44|1|I|A|2142
8E44|1|I|C|2143
8E44|1|I|G|2144
8E44|1|I|C|2145
8E44|1|I|C|2146
8E44|1|I|A|2147
8E44|1|I|G|2148
8E44|1|I|U|2149
8E44|1|I|C|2150
8E44|1|I|U|2151
8E44|1|I|G|2152
8E44|1|I|C|2153
*
8E44|1|I|G|2156
8E44|1|I|G|2157
8E44|1|I|A|2158
8E44|1|I|G|2159
8E44|1|I|C|2160
8E44|1|I|C|2161
8E44|1|I|G|2162
8E44|1|I|A|2163
8E44|1|I|C|2164
8E44|1|I|C|2165
8E44|1|I|U|2166
8E44|1|I|U|2167
8E44|1|I|G|2168
8E44|1|I|A|2169
8E44|1|I|A|2170
8E44|1|I|A|2171
8E44|1|I|U|2172
8E44|1|I|A|2173
8E44|1|I|C|2174
8E44|1|I|C|2175
8E44|1|I|A|2176
8E44|1|I|C|2177
8E44|1|I|C|2178
8E44|1|I|C|2179
8E44|1|I|U|2180
8E44|1|I|U|2181
8E44|1|I|U|2182
8E44|1|I|A|2183
8E44|1|I|A|2184
8E44|1|I|U|2185
8E44|1|I|G|2186
8E44|1|I|U|2187
8E44|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains