IL_8E45_012

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8E45|1|I|A|504, 8E45|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E45_012 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.091

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8E45|1|I|G|481
8E45|1|I|A|482
8E45|1|I|A|483
8E45|1|I|C|484
*
8E45|1|I|G|496
8E45|1|I|A|497
8E45|1|I|G|498
8E45|1|I|U|499
8E45|1|I|G|500
8E45|1|I|A|501
8E45|1|I|A|502
8E45|1|I|A|503
8E45|1|I|A|504
8E45|1|I|A|505
8E45|1|I|G|506
8E45|1|I|A|507
8E45|1|I|A|508
8E45|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22