IL_8E45_122

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E45_122 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0717

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8E45|1|I|G|1666
8E45|1|I|G|1667
8E45|1|I|A|1668
8E45|1|I|A|1669
8E45|1|I|C|1670
8E45|1|I|U|1671
8E45|1|I|A|1672
8E45|1|I|G|1673
8E45|1|I|G|1674
*
8E45|1|I|C|1990
8E45|1|I|U|1991
8E45|1|I|G|1992
8E45|1|I|U|1993
8E45|1|I|C|1994

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3