IL_8E46_006

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E46_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0764

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8E46|1|I|G|188
8E46|1|I|G|189
8E46|1|I|A|190
8E46|1|I|A|191
8E46|1|I|C|192
8E46|1|I|U|193
8E46|1|I|G|194
*
8E46|1|I|C|201
8E46|1|I|U|202
8E46|1|I|A|203
8E46|1|I|A|204
8E46|1|I|G|205
8E46|1|I|U|206
8E46|1|I|A|207
8E46|1|I|C|208

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15