IL_8E46_012

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8E46|1|I|A|504, 8E46|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E46_012 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0923

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8E46|1|I|G|481
8E46|1|I|A|482
8E46|1|I|A|483
8E46|1|I|C|484
*
8E46|1|I|G|496
8E46|1|I|A|497
8E46|1|I|G|498
8E46|1|I|U|499
8E46|1|I|G|500
8E46|1|I|A|501
8E46|1|I|A|502
8E46|1|I|A|503
8E46|1|I|A|504
8E46|1|I|A|505
8E46|1|I|G|506
8E46|1|I|A|507
8E46|1|I|A|508
8E46|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22