IL_8E46_133
3D structure
- PDB id
- 8E46 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to antibiotic analog SLC21
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.32 Å
Loop
- Sequence
- GACCCC*GAACUC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E46_133 not in the Motif Atlas
- Homologous match to IL_7A0S_105
- Geometric discrepancy: 0.2274
- The information below is about IL_7A0S_105
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
8E46|1|J|G|33
8E46|1|J|A|34
8E46|1|J|C|35
8E46|1|J|C|36
8E46|1|J|C|37
8E46|1|J|C|38
*
8E46|1|J|G|44
8E46|1|J|A|45
8E46|1|J|A|46
8E46|1|J|C|47
8E46|1|J|U|48
8E46|1|J|C|49
Current chains
- Chain J
- 5S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: