IL_8E47_017

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E47_017 not in the Motif Atlas

Geometric match to IL_7RQB_017

Geometric discrepancy: 0.1281

The information below is about IL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

270

Unit IDs

8E47|1|I|C|672
8E47|1|I|C|673
8E47|1|I|G|674
*
8E47|1|I|C|806
8E47|1|I|U|807
8E47|1|I|G|808

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain M

50S ribosomal protein L4