IL_8E47_085

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UUGA*UUGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E47_085 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2299

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8E47|1|I|U|2098
8E47|1|I|U|2099
8E47|1|I|G|2100
8E47|1|I|A|2101
*
8E47|1|I|U|2188
8E47|1|I|U|2189
8E47|1|I|G|2190
8E47|1|I|A|2191

Current chains

Chain I

23S ribosomal RNA

Nearby chains