IL_8E47_111

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E47_111 not in the Motif Atlas

Geometric match to IL_5TBW_112

Geometric discrepancy: 0.1779

The information below is about IL_5TBW_112

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8E47|1|J|U|5
8E47|1|J|G|6
8E47|1|J|G|7
*
8E47|1|J|C|113
8E47|1|J|C|114
8E47|1|J|A|115

Current chains

Chain J

5S ribosomal RNA

Nearby chains