IL_8E47_120

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGC*GACU

Length

7 nucleotides

Bulged bases

8E47|1|I|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E47_120 not in the Motif Atlas

Geometric match to IL_6CZR_411

Geometric discrepancy: 0.2496

The information below is about IL_6CZR_411

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

8E47|1|I|G|696
8E47|1|I|G|697
8E47|1|I|C|698
*
8E47|1|I|G|763
8E47|1|I|A|764
8E47|1|I|C|765
8E47|1|I|U|766

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2