IL_8E47_124

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

AGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCACU

Length

42 nucleotides

Bulged bases

8E47|1|I|U|1061, 8E47|1|I|A|1069, 8E47|1|I|A|1070, 8E47|1|I|U|1078

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E47|1|I|A|1054
8E47|1|I|G|1055
8E47|1|I|G|1056
8E47|1|I|A|1057
8E47|1|I|U|1058
8E47|1|I|G|1059
8E47|1|I|U|1060
8E47|1|I|U|1061
8E47|1|I|G|1062
8E47|1|I|G|1063
8E47|1|I|C|1064
8E47|1|I|U|1065
8E47|1|I|U|1066
8E47|1|I|A|1067
8E47|1|I|G|1068
8E47|1|I|A|1069
8E47|1|I|A|1070
8E47|1|I|G|1071
8E47|1|I|C|1072
8E47|1|I|A|1073
8E47|1|I|G|1074
8E47|1|I|C|1075
8E47|1|I|C|1076
8E47|1|I|A|1077
8E47|1|I|U|1078
8E47|1|I|C|1079
8E47|1|I|A|1080
8E47|1|I|U|1081
8E47|1|I|U|1082
8E47|1|I|U|1083
8E47|1|I|A|1084
8E47|1|I|A|1085
8E47|1|I|A|1086
8E47|1|I|G|1087
8E47|1|I|A|1088
8E47|1|I|A|1089
8E47|1|I|A|1090
*
8E47|1|I|U|1101
8E47|1|I|C|1102
8E47|1|I|A|1103
8E47|1|I|C|1104
8E47|1|I|U|1105

Current chains

Chain I

23S ribosomal RNA

Nearby chains