IL_8E47_128

3D structure

PDB id

8E47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC26

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E47_128 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1018

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

8E47|1|I|G|1666
8E47|1|I|G|1667
8E47|1|I|A|1668
8E47|1|I|A|1669
8E47|1|I|C|1670
8E47|1|I|U|1671
8E47|1|I|A|1672
8E47|1|I|G|1673
8E47|1|I|G|1674
*
8E47|1|I|C|1990
8E47|1|I|U|1991
8E47|1|I|G|1992
8E47|1|I|U|1993
8E47|1|I|C|1994

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3