IL_8E48_098

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

8E48|1|I|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E48_098 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.1485

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

8E48|1|I|U|2522
8E48|1|I|G|2523
*
8E48|1|I|C|2540
8E48|1|I|A|2541
8E48|1|I|A|2542
8E48|1|I|G|2543

Current chains

Chain I

23S ribosomal RNA

Nearby chains