IL_8E48_118

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

UCA*UGUUA

Length

8 nucleotides

Bulged bases

8E48|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E48_118 not in the Motif Atlas

Geometric match to IL_4V88_507

Geometric discrepancy: 0.2427

The information below is about IL_4V88_507

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8E48|1|I|U|847
8E48|1|I|C|848
8E48|1|I|A|849
*
8E48|1|I|U|929
8E48|1|I|G|930
8E48|1|I|U|931
8E48|1|I|U|932
8E48|1|I|A|933

Current chains

Chain I

23S ribosomal RNA

Nearby chains