IL_8E48_119

3D structure

PDB id

8E48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC30

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GCCA*UGC

Length

7 nucleotides

Bulged bases

8E48|1|I|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E48_119 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2297

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8E48|1|I|G|993
8E48|1|I|C|994
8E48|1|I|C|995
8E48|1|I|A|996
*
8E48|1|I|U|1159
8E48|1|I|G|1160
8E48|1|I|C|1161

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13