IL_8E48_120
3D structure
- PDB id
- 8E48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to antibiotic analog SLC30
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.27 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8E48|1|I|A|1127, 8E48|1|I|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E48_120 not in the Motif Atlas
- Homologous match to IL_5J7L_281
- Geometric discrepancy: 0.1594
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8E48|1|I|G|1024
8E48|1|I|G|1025
8E48|1|I|G|1026
8E48|1|I|A|1027
8E48|1|I|A|1028
8E48|1|I|A|1029
8E48|1|I|C|1030
*
8E48|1|I|G|1124
8E48|1|I|G|1125
8E48|1|I|A|1126
8E48|1|I|A|1127
8E48|1|I|G|1128
8E48|1|I|A|1129
8E48|1|I|U|1130
8E48|1|I|G|1131
8E48|1|I|U|1132
8E48|1|I|A|1133
8E48|1|I|A|1134
8E48|1|I|C|1135
8E48|1|I|G|1136
8E48|1|I|G|1137
8E48|1|I|G|1138
8E48|1|I|G|1139
8E48|1|I|C|1140
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L13
Coloring options: