IL_8EIU_073

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EIU_073 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3872

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8EIU|1|a|C|274
8EIU|1|a|C|275
8EIU|1|a|U|276
8EIU|1|a|G|277
8EIU|1|a|A|278
8EIU|1|a|A|279
8EIU|1|a|U|280
8EIU|1|a|C|281
*
8EIU|1|a|G|359
8EIU|1|a|U|360
8EIU|1|a|G|361
8EIU|1|a|A|362
8EIU|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains