IL_8EIU_127

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8EIU|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EIU_127 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.075

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8EIU|1|a|U|1712
8EIU|1|a|A|1713
8EIU|1|a|U|1714
8EIU|1|a|G|1715
8EIU|1|a|U|1716
8EIU|1|a|A|1717
8EIU|1|a|G|1718
*
8EIU|1|a|U|1742
8EIU|1|a|G|1743
8EIU|1|a|A|1744
8EIU|1|a|A|1745
8EIU|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains