IL_8EKB_043
3D structure
- PDB id
- 8EKB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGAUG*UAAG
- Length
- 9 nucleotides
- Bulged bases
- 8EKB|1|1A|U|1205
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EKB_043 not in the Motif Atlas
- Homologous match to IL_7RQB_046
- Geometric discrepancy: 0.0568
- The information below is about IL_7RQB_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68574.2
- Basepair signature
- cWW-tHH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
8EKB|1|1A|C|1202
8EKB|1|1A|G|1203
8EKB|1|1A|A|1204
8EKB|1|1A|U|1205
8EKB|1|1A|G|1206
*
8EKB|1|1A|U|1240
8EKB|1|1A|A|1241
8EKB|1|1A|A|1242
8EKB|1|1A|G|1243
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
Coloring options: