3D structure

PDB id
8EKB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GCCUGUGAACC*GGGGAGGC
Length
19 nucleotides
Bulged bases
8EKB|1|1A|U|2132
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8EKB|1|1A|G|2127
8EKB|1|1A|C|2128
8EKB|1|1A|C|2129
8EKB|1|1A|U|2130
8EKB|1|1A|G|2131
8EKB|1|1A|U|2132
8EKB|1|1A|G|2133
8EKB|1|1A|A|2134
8EKB|1|1A|A|2135
8EKB|1|1A|C|2136
8EKB|1|1A|C|2137
*
8EKB|1|1A|G|2154
8EKB|1|1A|G|2155
8EKB|1|1A|G|2156
8EKB|1|1A|G|2157
8EKB|1|1A|A|2158
8EKB|1|1A|G|2159
8EKB|1|1A|G|2160
8EKB|1|1A|C|2161

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

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