IL_8EKB_237

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

8EKB|1|2A|G|1801, 8EKB|1|2A|G|1816, 8EKB|1|2A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_237 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0341

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8EKB|1|2A|U|1798
8EKB|1|2A|G|1799
8EKB|1|2A|C|1800
8EKB|1|2A|G|1801
8EKB|1|2A|A|1802
8EKB|1|2A|A|1803
8EKB|1|2A|C|1804
*
8EKB|1|2A|G|1813
8EKB|1|2A|G|1814
8EKB|1|2A|A|1815
8EKB|1|2A|G|1816
8EKB|1|2A|G|1817
8EKB|1|2A|U|1818
8EKB|1|2A|A|1819
8EKB|1|2A|U|1820
8EKB|1|2A|A|1821

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA