IL_8EKB_299

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

8EKB|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_299 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1052

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8EKB|1|2a|G|409
8EKB|1|2a|G|410
8EKB|1|2a|A|411
8EKB|1|2a|A|412
8EKB|1|2a|G|413
8EKB|1|2a|A|414
8EKB|1|2a|A|415
8EKB|1|2a|G|416
*
8EKB|1|2a|U|427
8EKB|1|2a|G|428
8EKB|1|2a|U|429
8EKB|1|2a|A|430
8EKB|1|2a|A|431
8EKB|1|2a|A|432
8EKB|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4