IL_8EKB_364

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKB_364 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.3456

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

8EKB|1|2a|5MC|1407
8EKB|1|2a|A|1408
8EKB|1|2a|C|1409
*
8EKB|1|2a|G|1491
8EKB|1|2a|A|1492
8EKB|1|2a|A|1493
8EKB|1|2a|G|1494

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2m

30S ribosomal protein S13

Chain 2v

M-Stop-mRNA