IL_8EKC_049

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8EKC|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKC_049 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.0764

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8EKC|1|A|C|1417
8EKC|1|A|G|1418
8EKC|1|A|A|1419
8EKC|1|A|A|1420
8EKC|1|A|G|1421
*
8EKC|1|A|C|1577
8EKC|1|A|U|1578
8EKC|1|A|A|1579
8EKC|1|A|A|1580
8EKC|1|A|G|1581

Current chains

Chain A

23S Ribosomal RNA

Nearby chains