IL_8EKC_054

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKC_054 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3576

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8EKC|1|A|U|1474
8EKC|1|A|G|1475
8EKC|1|A|U|1476
8EKC|1|A|A|1477
8EKC|1|A|G|1478
8EKC|1|A|G|1479
*
8EKC|1|A|C|1512
8EKC|1|A|U|1513
8EKC|1|A|G|1514
8EKC|1|A|A|1515
8EKC|1|A|G|1516
8EKC|1|A|G|1517

Current chains

Chain A

23S Ribosomal RNA

Nearby chains