IL_8EKC_081

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGCCUU*AAUGUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKC_081 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3358

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8EKC|1|A|A|2101
8EKC|1|A|G|2102
8EKC|1|A|C|2103
8EKC|1|A|C|2104
8EKC|1|A|U|2105
8EKC|1|A|U|2106
*
8EKC|1|A|A|2183
8EKC|1|A|A|2184
8EKC|1|A|U|2185
8EKC|1|A|G|2186
8EKC|1|A|U|2187
8EKC|1|A|U|2188

Current chains

Chain A

23S Ribosomal RNA

Nearby chains