IL_8EKC_129

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EKC_129 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.1422

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8EKC|1|a|G|292
8EKC|1|a|G|293
*
8EKC|1|a|U|304
8EKC|1|a|G|305
8EKC|1|a|A|306
8EKC|1|a|C|307
8EKC|1|a|C|308

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16