IL_8EKC_198

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

8EKC|1|A|G|2125, 8EKC|1|A|U|2132, 8EKC|1|A|C|2161, 8EKC|1|A|C|2165, 8EKC|1|A|A|2170, 8EKC|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8EKC|1|A|G|2124
8EKC|1|A|G|2125
8EKC|1|A|A|2126
8EKC|1|A|G|2127
8EKC|1|A|G|2128
8EKC|1|A|C|2129
8EKC|1|A|U|2130
8EKC|1|A|U|2131
8EKC|1|A|U|2132
8EKC|1|A|G|2133
8EKC|1|A|A|2134
8EKC|1|A|A|2135
8EKC|1|A|G|2136
8EKC|1|A|U|2137
*
8EKC|1|A|A|2154
8EKC|1|A|U|2155
8EKC|1|A|G|2156
8EKC|1|A|G|2157
8EKC|1|A|A|2158
8EKC|1|A|G|2159
8EKC|1|A|C|2160
8EKC|1|A|C|2161
8EKC|1|A|G|2162
8EKC|1|A|A|2163
8EKC|1|A|C|2164
8EKC|1|A|C|2165
8EKC|1|A|U|2166
8EKC|1|A|U|2167
8EKC|1|A|G|2168
8EKC|1|A|A|2169
8EKC|1|A|A|2170
8EKC|1|A|A|2171
8EKC|1|A|U|2172
8EKC|1|A|A|2173
8EKC|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains