IL_8EMM_001

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

8EMM|1|A|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_001 not in the Motif Atlas

Homologous match to IL_5J7L_001

Geometric discrepancy: 0.0921

The information below is about IL_5J7L_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8EMM|1|A|U|30
8EMM|1|A|G|31
8EMM|1|A|A|32
*
8EMM|1|A|U|552
8EMM|1|A|A|553

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12