3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GG*UGACC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_016 not in the Motif Atlas
Homologous match to IL_4LFB_013
Geometric discrepancy: 0.0961
The information below is about IL_4LFB_013
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_06671.1
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
10

Unit IDs

8EMM|1|A|G|292
8EMM|1|A|G|293
*
8EMM|1|A|U|304
8EMM|1|A|G|305
8EMM|1|A|A|306
8EMM|1|A|C|307
8EMM|1|A|C|308

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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