IL_8EMM_020

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.102

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8EMM|1|A|U|409
8EMM|1|A|G|410
8EMM|1|A|A|411
8EMM|1|A|A|412
8EMM|1|A|G|413
8EMM|1|A|A|414
8EMM|1|A|A|415
8EMM|1|A|G|416
*
8EMM|1|A|U|427
8EMM|1|A|G|428
8EMM|1|A|U|429
8EMM|1|A|A|430
8EMM|1|A|A|431
8EMM|1|A|A|432
8EMM|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4