3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_072 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0406
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8EMM|1|a|G|188
8EMM|1|a|G|189
8EMM|1|a|A|190
8EMM|1|a|A|191
8EMM|1|a|C|192
8EMM|1|a|U|193
8EMM|1|a|G|194
*
8EMM|1|a|C|201
8EMM|1|a|U|202
8EMM|1|a|A|203
8EMM|1|a|A|204
8EMM|1|a|G|205
8EMM|1|a|U|206
8EMM|1|a|A|207
8EMM|1|a|C|208

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain k
50S ribosomal protein L15
Chain w
50S ribosomal protein L28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1254 s