IL_8EMM_075

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3955

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8EMM|1|a|C|274
8EMM|1|a|C|275
8EMM|1|a|U|276
8EMM|1|a|G|277
8EMM|1|a|A|278
8EMM|1|a|A|279
8EMM|1|a|U|280
8EMM|1|a|C|281
*
8EMM|1|a|G|359
8EMM|1|a|U|360
8EMM|1|a|G|361
8EMM|1|a|A|362
8EMM|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains