IL_8EMM_098

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8EMM_098 not in the Motif Atlas

Geometric match to IL_9E9Q_004

Geometric discrepancy: 0.3397

The information below is about IL_9E9Q_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8EMM|1|a|G|880
8EMM|1|a|G|881
*
8EMM|1|a|U|895
8EMM|1|a|A|896
8EMM|1|a|C|897

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA