3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GUC*GAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_099 not in the Motif Atlas
Geometric match to IL_1U9S_007
Geometric discrepancy: 0.1871
The information below is about IL_1U9S_007
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8EMM|1|a|G|883
8EMM|1|a|U|884
8EMM|1|a|C|885
*
8EMM|1|a|G|891
8EMM|1|a|A|892
8EMM|1|a|C|893

Current chains

Chain a
23S rRNA

Nearby chains

Chain Y
Transfer RNA; tRNA

Coloring options:


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