IL_8EMM_099
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUC*GAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GUC,GAC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EMM_099 not in the Motif Atlas
- Geometric match to IL_1U9S_007
- Geometric discrepancy: 0.1871
- The information below is about IL_1U9S_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
8EMM|1|a|G|883
8EMM|1|a|U|884
8EMM|1|a|C|885
*
8EMM|1|a|G|891
8EMM|1|a|A|892
8EMM|1|a|C|893
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain Y
- Transfer RNA; tRNA
Coloring options: