IL_8EMM_116
3D structure
- PDB id
- 8EMM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CGAGG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8EMM_116 not in the Motif Atlas
- Homologous match to IL_5J7L_293
- Geometric discrepancy: 0.0603
- The information below is about IL_5J7L_293
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8EMM|1|a|C|1357
8EMM|1|a|G|1358
8EMM|1|a|A|1359
8EMM|1|a|G|1360
8EMM|1|a|G|1361
*
8EMM|1|a|C|1370
8EMM|1|a|G|1371
8EMM|1|a|U|1372
8EMM|1|a|A|1373
8EMM|1|a|G|1374
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
- Chain w
- 50S ribosomal protein L28
Coloring options: