3D structure

PDB id
8EMM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
8EMM|1|a|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8EMM_130 not in the Motif Atlas
Homologous match to IL_5J7L_307
Geometric discrepancy: 0.0422
The information below is about IL_5J7L_307
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

8EMM|1|a|A|1669
8EMM|1|a|C|1670
8EMM|1|a|U|1671
8EMM|1|a|A|1672
8EMM|1|a|G|1673
8EMM|1|a|G|1674
*
8EMM|1|a|C|1990
8EMM|1|a|U|1991
8EMM|1|a|G|1992
8EMM|1|a|U|1993

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
50S ribosomal protein L3
Chain j
50S ribosomal protein L14

Coloring options:


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